The content in this chapter consists of the results of the experiment of pattern matching algorithm by the result from the test algorithm that has developed in relation to the underlying algorithms that research attention. A comparison of the results will be used to speed the work performance descriptors and use the pattern occurrence indicates the accuracy in the work. In the assessment. Researchers have used standard is selected, all the English information, 4 types of amino acid, protein sequence and random data with the uniform distribution for the data we used in testing, it can be downloaded from the SMART TOOL Web site.
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